Stock-based detection of protein oligomeric states in jsPISA
نویسنده
چکیده
A new version of the popular software PISA for the analysis of macromolecular interfaces and identification of biological assemblies (complexes) from macromolecular crystal structures is presented. The new web server jsPISA has a substantially improved user interface, based on modern JavaScript technologies, and also new elements of analysis: assembly stock and interaction radar. The new elements help interpretation of PISA results in difficult and ambiguous cases, for example, when the oligomeric state depends on protein concentration, or when the biologically relevant interaction is weak and cannot be easily discriminated from superficial crystal contacts. jsPISA is maintained by CCP4 at http://www.ccp4.ac.uk/pisa. There are no login requirements for using the server.
منابع مشابه
Stock Market Interactions between the BRICS and the United States: Evidence from Asymmetric Granger Causality Tests in the Frequency Domain
The interaction of BRICS stock markets with the United States is studied using an asymmetric Granger causality test based on the frequency domain. This type of analysis allows for both positive and negative shocks over different horizons. There is a clear bivariate causality that runs both ways between the United States stock market and the respective BRICS markets. In addition, both negative a...
متن کاملEffect of different levels of dietary nucleotide on immunity and total protein plasma parameters of Litopenaeus vannamei (Boone, 1931) female brood stock during maturation and eyestalk ablation
In this study, we investigated the effects of different levels of dietary nucleotide (0, 0.2, 0.4 and 0.6%) on immunity parameters and total protein plasma of Litopenaeus vannamei female brood stock in four experimental treatments (three replication per treatment) during the maturation period and after eye stalk ablation. Total soluble proteins and immunity parameters such as total haemocyte co...
متن کاملMonitoring Financial Processes with ARMA-GARCH Model Based on Shewhart Control Chart (Case Study: Tehran Stock Exchange)
Financial surveillance is an interesting area after financial crisis in recent years. In this subject, important financial indices are monitored using control charts. Control chart is a powerful instrument for detecting assignable causes which is considerably developed in industrial and service environments. In this paper, a monitoring procedure based on Shewhart control chart is proposed to mo...
متن کاملApplication of Sinusoidal Equations to Partitioning Crude Protein and Metabolizable Energy Intake between Maintenance and Growth in Parent Stock of Broiler Chickens
Most models developed for poultry are linear to the point where genetic potential is reached. Models reliant on the premise that growth rate determines requirements based on some fixed rate of nutrient utilization do not adequately represent the biological phenomena involved. Therefore, a dichotomy between the accepted theories of nutrient utilization in animals and the assumptions of mathemati...
متن کاملDevelopment of a recombinant protein-based dot-blot hybridization assay for the detection of antibody to chicken infectious bronchitis virus
Nucleocapsid (N) protein of infectious bronchitis virus (IBV), one of the viral structural proteins, inducesstrong antibody response in natural infection. In this study, a simple, recombinant N protein-based dot-blottest was developed to serologically examine chicken serum samples for the presence of IBV antibody.Initially, 72 serum samples were tested for the presence of IBV antibody using a c...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره 43 شماره
صفحات -
تاریخ انتشار 2015